<?xml version="1.0" encoding="UTF-8"?>
<rss version="2.0"
	xmlns:content="http://purl.org/rss/1.0/modules/content/"
	xmlns:wfw="http://wellformedweb.org/CommentAPI/"
	xmlns:dc="http://purl.org/dc/elements/1.1/"
	xmlns:atom="http://www.w3.org/2005/Atom"
	xmlns:sy="http://purl.org/rss/1.0/modules/syndication/"
	xmlns:slash="http://purl.org/rss/1.0/modules/slash/"
	>

<channel>
	<title>Mimijidi</title>
	<atom:link href="http://otherside.mimijidi.com/feed/" rel="self" type="application/rss+xml" />
	<link>http://otherside.mimijidi.com</link>
	<description></description>
	<lastBuildDate>Fri, 18 Dec 2009 15:21:55 +0000</lastBuildDate>
	<generator>http://wordpress.org/?v=2.9.2</generator>
	<language>en</language>
	<sy:updatePeriod>hourly</sy:updatePeriod>
	<sy:updateFrequency>1</sy:updateFrequency>
			<item>
		<title>Samtools Has a GLFv3 Viewer</title>
		<link>http://otherside.mimijidi.com/entries/samtools-has-a-glfv3-viewer/</link>
		<comments>http://otherside.mimijidi.com/entries/samtools-has-a-glfv3-viewer/#comments</comments>
		<pubDate>Fri, 18 Dec 2009 15:21:55 +0000</pubDate>
		<dc:creator>Zhen Sun</dc:creator>
				<category><![CDATA[5300]]></category>

		<guid isPermaLink="false">http://otherside.mimijidi.com/?p=193</guid>
		<description><![CDATA[I was asked to generate a ASCII version of a samtools generated GLFv3 file yesterday. We were thinking about using a set of programs named glfProgs, which is available on Maq&#8217;s sourceforge page, but had no luck: gzread complains cannot open file. After read a few lines of the source code of samtools I found [...]]]></description>
			<content:encoded><![CDATA[<p>I was asked to generate a ASCII version of a <a href="http://samtools.sourceforge.net/">samtools</a> generated GLFv3 file yesterday. We were thinking about using a set of programs named <a href="http://maq.sourceforge.net/glfProgs.shtml">glfProgs</a>, which is available on <a href="http://maq.sourceforge.net/">Maq&#8217;s sourceforge page</a>, but had no luck: gzread complains cannot open file. After read a few lines of the source code of samtools I found that samtools (v0.17) has a glf viewer itself but is not written in the manual.</p>

<blockquote>
  <p>glfview     print GLFv3 file</p>
</blockquote>

<p>Neat. If you run samtools without any arguments it will also tell you this, but we barely do it these days.</p>
]]></content:encoded>
			<wfw:commentRss>http://otherside.mimijidi.com/entries/samtools-has-a-glfv3-viewer/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>You Don&#8217;t Need Great Hardware to Do Good Work</title>
		<link>http://otherside.mimijidi.com/entries/you-dont-need-great-hardware-to-do-good-work/</link>
		<comments>http://otherside.mimijidi.com/entries/you-dont-need-great-hardware-to-do-good-work/#comments</comments>
		<pubDate>Wed, 09 Dec 2009 15:07:16 +0000</pubDate>
		<dc:creator>Zhen Sun</dc:creator>
				<category><![CDATA[5300]]></category>

		<guid isPermaLink="false">http://otherside.mimijidi.com/?p=191</guid>
		<description><![CDATA[Jeffrey:


  Unless you&#8217;re editing high-def video or creating feature film animation,
  you don&#8217;t need great hardware to do good work. You just need a passion
  for the work.


I use my almost-4-year-old Macbook Pro while I&#8217;m writing/debugging code and it works great for me. For data analysis we use a much more powerful [...]]]></description>
			<content:encoded><![CDATA[<p><a href="http://jeffrey.zeldman.usesthis.com/">Jeffrey</a>:</p>

<blockquote>
  <p>Unless you&#8217;re editing high-def video or creating feature film animation,<br />
  you don&#8217;t need great hardware to do good work. You just need a passion<br />
  for the work.</p>
</blockquote>

<p>I use my almost-4-year-old Macbook Pro while I&#8217;m writing/debugging code and it works great for me. For data analysis we use a much more powerful Debian box (sshed from Macbook Pro and other computers), but that is another story.</p>
]]></content:encoded>
			<wfw:commentRss>http://otherside.mimijidi.com/entries/you-dont-need-great-hardware-to-do-good-work/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>原來是做夢啊</title>
		<link>http://otherside.mimijidi.com/entries/get-up-in-a-dream/</link>
		<comments>http://otherside.mimijidi.com/entries/get-up-in-a-dream/#comments</comments>
		<pubDate>Thu, 03 Dec 2009 15:14:39 +0000</pubDate>
		<dc:creator>Zhen Sun</dc:creator>
				<category><![CDATA[5300]]></category>

		<guid isPermaLink="false">http://otherside.mimijidi.com/?p=189</guid>
		<description><![CDATA[今天早上接到電話，之後又倒在床上。不知怎麼就開始收拾東西，收拾到一半突然覺得不對，睜開眼睛，原來是在夢裡收拾東西。
]]></description>
			<content:encoded><![CDATA[<p>今天早上接到電話，之後又倒在床上。不知怎麼就開始收拾東西，收拾到一半突然覺得不對，睜開眼睛，原來是在夢裡收拾東西。</p>
]]></content:encoded>
			<wfw:commentRss>http://otherside.mimijidi.com/entries/get-up-in-a-dream/feed/</wfw:commentRss>
		<slash:comments>1</slash:comments>
		</item>
		<item>
		<title>那是好多年前的笑話</title>
		<link>http://otherside.mimijidi.com/entries/joke-in-2003/</link>
		<comments>http://otherside.mimijidi.com/entries/joke-in-2003/#comments</comments>
		<pubDate>Tue, 24 Nov 2009 21:07:21 +0000</pubDate>
		<dc:creator>Zhen Sun</dc:creator>
				<category><![CDATA[5300]]></category>

		<guid isPermaLink="false">http://otherside.mimijidi.com/?p=186</guid>
		<description><![CDATA[在水木清華的 joke 版翻到好多年前的笑話：


  发信人: wsdsd (和你在一起), 信区: Joke
  标  题: 好人呐
  发信站: BBS 水木清华站 (Fri Oct 10 19:01:28 2003)
  
  前天晚上10：00，在我所住的小区里。
  那天我让mm生了好几次的气，都怪我没对她言听计从。
  最后在往回走的路上，我乞求她的原谅。
  mm：你得先把我背回去，我再考虑
  mm：你先蹲下，我懒得往上跳
  mm: 你两手抱住喽，你
  这样走了大概有十分钟，一辆怕撒特从身边开了过去。
  一会，那车又倒了回来，停在我们旁边。
  “快上车吧，这儿离医院还远着呢！”
  我无语……


又想起來這些日子倒鉤的事情。
]]></description>
			<content:encoded><![CDATA[<p>在<a href="http://newsmth.com/">水木清華</a>的 joke 版翻到好多年前的笑話：</p>

<blockquote>
  <p>发信人: wsdsd (和你在一起), 信区: Joke<br />
  标  题: 好人呐<br />
  发信站: BBS 水木清华站 (Fri Oct 10 19:01:28 2003)<br />
  <br />
  前天晚上10：00，在我所住的小区里。<br />
  那天我让mm生了好几次的气，都怪我没对她言听计从。<br />
  最后在往回走的路上，我乞求她的原谅。<br />
  mm：你得先把我背回去，我再考虑<br />
  mm：你先蹲下，我懒得往上跳<br />
  mm: 你两手抱住喽，你<br />
  这样走了大概有十分钟，一辆怕撒特从身边开了过去。<br />
  一会，那车又倒了回来，停在我们旁边。<br />
  “快上车吧，这儿离医院还远着呢！”<br />
  我无语……</p>
</blockquote>

<p>又想起來這些日子倒鉤的事情。</p>
]]></content:encoded>
			<wfw:commentRss>http://otherside.mimijidi.com/entries/joke-in-2003/feed/</wfw:commentRss>
		<slash:comments>1</slash:comments>
		</item>
		<item>
		<title>TopSite Keyboard Shortcut Changed in Safari 4.0.4</title>
		<link>http://otherside.mimijidi.com/entries/topsite-keyboard-shortcut-changed-in-safari-4-0-4/</link>
		<comments>http://otherside.mimijidi.com/entries/topsite-keyboard-shortcut-changed-in-safari-4-0-4/#comments</comments>
		<pubDate>Thu, 12 Nov 2009 16:04:29 +0000</pubDate>
		<dc:creator>Zhen Sun</dc:creator>
				<category><![CDATA[5300]]></category>

		<guid isPermaLink="false">http://otherside.mimijidi.com/?p=181</guid>
		<description><![CDATA[The keyboard shortcut of &#8220;TopSite&#8221; changed from cmd+shift+1 to cmd+opt+1. Makes my fingers uncomfortable sometimes since I use this feature several times a day.
]]></description>
			<content:encoded><![CDATA[<p>The keyboard shortcut of &#8220;TopSite&#8221; changed from <code>cmd+shift+1</code> to <code>cmd+opt+1</code>. Makes my fingers uncomfortable sometimes since I use this feature several times a day.</p>
]]></content:encoded>
			<wfw:commentRss>http://otherside.mimijidi.com/entries/topsite-keyboard-shortcut-changed-in-safari-4-0-4/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Profit</title>
		<link>http://otherside.mimijidi.com/entries/profit/</link>
		<comments>http://otherside.mimijidi.com/entries/profit/#comments</comments>
		<pubDate>Thu, 05 Nov 2009 21:28:31 +0000</pubDate>
		<dc:creator>Zhen Sun</dc:creator>
				<category><![CDATA[5300]]></category>

		<guid isPermaLink="false">http://otherside.mimijidi.com/?p=179</guid>
		<description><![CDATA[Jason Fried of 37Signals:


  It really bothers me that the definition of success has changed from
  profits to followers, friends, and feed count. This crap doesn&#8217;t mean
  anything. Kids are coming out of school thinking, I want to start the
  next YouTube or Facebook. If a restaurant served more food than
 [...]]]></description>
			<content:encoded><![CDATA[<p><a href="http://www.inc.com/magazine/20091101/the-way-i-work-jason-fried-of-37signals.html">Jason Fried</a> of 37Signals:</p>

<blockquote>
  <p>It really bothers me that the definition of success has changed from<br />
  profits to followers, friends, and feed count. This crap doesn&#8217;t mean<br />
  anything. Kids are coming out of school thinking, I want to start the<br />
  next YouTube or Facebook. If a restaurant served more food than<br />
  everybody else but lost money on every diner, would it be successful?<br />
  No. But on the Internet, for some reason, if you have more users than<br />
  everyone else, you&#8217;re successful. No, you&#8217;re not.</p>
</blockquote>

<p>Agreed.</p>
]]></content:encoded>
			<wfw:commentRss>http://otherside.mimijidi.com/entries/profit/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Regarding Single Application Mode</title>
		<link>http://otherside.mimijidi.com/entries/regarding-single-application-mode/</link>
		<comments>http://otherside.mimijidi.com/entries/regarding-single-application-mode/#comments</comments>
		<pubDate>Tue, 03 Nov 2009 16:11:17 +0000</pubDate>
		<dc:creator>Zhen Sun</dc:creator>
				<category><![CDATA[Application]]></category>
		<category><![CDATA[Mac]]></category>
		<category><![CDATA[dragthing]]></category>

		<guid isPermaLink="false">http://otherside.mimijidi.com/?p=171</guid>
		<description><![CDATA[Regarding TidBITS&#8217;s &#8220;Hidden Single-Application Mode&#8221;:


  But it goes further. Lurking in the scary bowels of Mac OS X for all
  these years has been this little command, which brings back
  single-application mode. (Go ahead and try it &#8211; it&#8217;s easily reversed.)
  defaults write com.apple.dock single-app -bool true For
  single-application mode [...]]]></description>
			<content:encoded><![CDATA[<p>Regarding <a href="http://db.tidbits.com/article/10624">TidBITS&#8217;s &#8220;Hidden Single-Application Mode&#8221;</a>:</p>

<blockquote>
  <p>But it goes further. Lurking in the scary bowels of Mac OS X for all<br />
  these years has been this little command, which brings back<br />
  single-application mode. (Go ahead and try it &#8211; it&#8217;s easily reversed.)<br />
  defaults write com.apple.dock single-app -bool true For<br />
  single-application mode to take effect, you have to relaunch the Dock<br />
  with this second command. killall Dock</p>
</blockquote>

<p>Previously I use <a href="http://www.macupdate.com/dev.php?id=30492">multiXFinder</a> for this kind of job, which is free and play nicely with Snow Leopard. Additionally, it can also active the &#8220;Single Application Mode&#8221; while using <code>Command + tab</code> to switch applications. No need to mention the love of whitelist for some particular applications. Days ago I re-invited <a href="http://dragthing.com/">DragThing</a> to my system and remember that DragThing itself has the exactly same feature.</p>

<p class="cr"><img src="http://otherside.mimijidi.com/wp-content/uploads/2009/11/Screen-shot-2009-11-03-at-10.49.22-AM.png" alt="DragThing Single Application Mode" width="335" height="105" class="aligncenter size-full wp-image-172" style="border: #aaa 1px solid; padding: 5px"/></p>

<p>Finally I use AppleScript to toggle this behavior, and it is lunched by FastScript.</p>

<pre><code>tell application "DragThing"
    if not (hide other applications when switching) then
        set hide other applications when switching to true
    else
        set hide other applications when switching to false
    end if
end tell
</code></pre>
]]></content:encoded>
			<wfw:commentRss>http://otherside.mimijidi.com/entries/regarding-single-application-mode/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>BBEdit Is Still Fast</title>
		<link>http://otherside.mimijidi.com/entries/bbedit-is-still-fast/</link>
		<comments>http://otherside.mimijidi.com/entries/bbedit-is-still-fast/#comments</comments>
		<pubDate>Fri, 30 Oct 2009 13:40:20 +0000</pubDate>
		<dc:creator>Zhen Sun</dc:creator>
				<category><![CDATA[Application]]></category>
		<category><![CDATA[Mac]]></category>

		<guid isPermaLink="false">http://otherside.mimijidi.com/?p=160</guid>
		<description><![CDATA[Actually BBEdit is still fast. More than 10 years ago (July 1997), On ATPM&#8217;s &#8220;Review :BBEdit 4.0.4&#8243;:


  This review really wouldn’t be complete without mentioning BBEdit’s
  incredible speed. While many of our readers might not consider speed to
  be a noteworthy trait for a text editor, I could easily find programs
  [...]]]></description>
			<content:encoded><![CDATA[<p>Actually BBEdit is still <em>fast</em>. More than 10 years ago (July 1997), <a href="http://www.atpm.com/3.07/page11.shtml">On ATPM&#8217;s &#8220;Review :BBEdit 4.0.4&#8243;</a>:</p>

<blockquote>
  <p>This review really wouldn’t be complete without mentioning BBEdit’s<br />
  incredible speed. While many of our readers might not consider speed to<br />
  be a noteworthy trait for a text editor, I could easily find programs<br />
  that deal with text in a drudgingly slow manner (Microsoft Word 6.0<br />
  comes to mind). BBEdit’s speed is apparent in every task it achieves,<br />
  from scrolling, to searching and replacing, to formatting HTML to<br />
  executing macros, BBEdit is the fastest text editor on the face of the<br />
  planet, and without question the fastest HTML editor in the universe.</p>
</blockquote>

<p>Even today, open a 200mb plain text file in both BBEdit and TextMate, scroll up and down, you&#8217;ll see what I mean.</p>
]]></content:encoded>
			<wfw:commentRss>http://otherside.mimijidi.com/entries/bbedit-is-still-fast/feed/</wfw:commentRss>
		<slash:comments>2</slash:comments>
		</item>
		<item>
		<title>Beautiful</title>
		<link>http://otherside.mimijidi.com/entries/beautiful/</link>
		<comments>http://otherside.mimijidi.com/entries/beautiful/#comments</comments>
		<pubDate>Tue, 20 Oct 2009 21:47:28 +0000</pubDate>
		<dc:creator>Zhen Sun</dc:creator>
				<category><![CDATA[Hardware]]></category>
		<category><![CDATA[Mac]]></category>
		<category><![CDATA[mouse]]></category>

		<guid isPermaLink="false">http://otherside.mimijidi.com/?p=152</guid>
		<description><![CDATA[

The Magic Mouse is the new mighty mouse.


Multi-Touch Surface
Bluetooth Wireless
No more 360° sticky ball


Just released by Apple today.
]]></description>
			<content:encoded><![CDATA[<p class="cr"><img src="http://otherside.mimijidi.com/wp-content/uploads/2009/10/hero_1_20091020-300x103.jpg" alt="Apple Magic Mouse" title="Magic Mouse" width="300" height="103" class="aligncenter size-medium wp-image-153" /></p>

<p>The <a href="http://www.apple.com/magicmouse/">Magic Mouse</a> is the new mighty mouse.</p>

<ul>
<li>Multi-Touch Surface</li>
<li>Bluetooth Wireless</li>
<li>No more 360° <em>sticky</em> ball</li>
</ul>

<p>Just released by Apple today.</p>
]]></content:encoded>
			<wfw:commentRss>http://otherside.mimijidi.com/entries/beautiful/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
		<item>
		<title>Universal Binary Version of Dot</title>
		<link>http://otherside.mimijidi.com/entries/universal-binary-version-of-dot/</link>
		<comments>http://otherside.mimijidi.com/entries/universal-binary-version-of-dot/#comments</comments>
		<pubDate>Tue, 13 Oct 2009 18:42:35 +0000</pubDate>
		<dc:creator>Zhen Sun</dc:creator>
				<category><![CDATA[Mac]]></category>
		<category><![CDATA[taverna]]></category>

		<guid isPermaLink="false">http://otherside.mimijidi.com/?p=145</guid>
		<description><![CDATA[I use Taverna workbench a lot in a project I&#8217;m doing right now. After upgraded to Snow Leopard which does not provide Rosette by default anymore, I found that “dot”, the program shipped with Taverna 2.1 Beta 2 used for drawing workflows, was not Universial Binary yet.

No need to say I want to use Taverna, [...]]]></description>
			<content:encoded><![CDATA[<p>I use <a href="http://taverna.sourceforge.net/">Taverna</a> workbench a lot in a project I&#8217;m doing right now. After upgraded to Snow Leopard which does not provide Rosette by default anymore, I found that “<a href="http://www.graphviz.org/">dot</a>”, the program shipped with Taverna 2.1 Beta 2 used for drawing workflows, was not Universial Binary yet.</p>

<p>No need to say I want to use Taverna, but I don’t want to use install Rosette. Since dot is part of <a href="http://www.graphviz.org/">Graphviz</a>, we need to install a Universal Binary version of graphviz.</p>

<p>The first way is build it by <em>yourself</em>. It can be hard, but if you use <a href="http://macports.org/">macports</a> that would be easy. This will be great and convenient if you build every unix program with macports, otherwise you’ll get a lot more than what you need. For me, 400+ Mb of libraries and programs installed by macports.</p>

<p>The other way is using Graphviz <a href="http://www.pixelglow.com/graphviz/download/">compiled by Glen Low</a> or <a href="http://www.ryandesign.com/graphviz/">by Ryan Schmidt</a>. These two packages will install Graphviz and necessary libraries to the system. Glens&#8217; has a higher version (2.20.3), but either of above should works fine for you.</p>

<p>After installed Graphviz, we can assign a dot location in Taverna’s preferences.</p>
]]></content:encoded>
			<wfw:commentRss>http://otherside.mimijidi.com/entries/universal-binary-version-of-dot/feed/</wfw:commentRss>
		<slash:comments>0</slash:comments>
		</item>
	</channel>
</rss>
